This dataset is composed of genomic features other than LTR-Retrotransposons (LTR_RTs), such as coding sequences (CDS), different types of RNA (e.g., mRNA, tRNA, non-coding RNA, among others), and other types of transposable elements that do not belong to LTR-RTs (e.g., TEs Class II, PLEs, DIRs, LINEs, and SINEs) from the same plant species contained in InpactorDB (DOI 10.5281/zenodo.4386316). These additional transposable element sequences were available in databases such as PGSB PlantsDB, Repbase (v. 20.05, 2017), RepetDB, Ensembl Plants, and JGI (Joint Genome Institute).