In this paper we present the results of monitoring a building integrated photovoltaic (BIPV) system, which was installed in Medio San Juan (Andagoya), Colombia. The system is operating in the Building of Renewable Energy of Chocó – CERCHOCO – and it is composed of a 20 kW photovoltaic generator connected to the electrical grid through a 20 kW three-phase inverter. We installed a monitoring system for measuring and analyzing the performance and power quality of the BIPV system. The meteorological and solar radiation data in the site of installation are also analyzed to correlate with system performance. On the basis of 2016 monitoring results, the performance of the BIPV system has been analyzed for component perspective (PV array and inverter) and global perspective (system efficiency, electrical energy and power quality etc.). Energy analysis and economic evaluation revealed that to get a trade off between energy and economic viability, the BIPVS installations must be heavily subsidized.