The ductus venosus reflects the cardiac cycle, but currently there is no information about the relationship between the ductus venosus waves with the different groups of cardiac congenital disease. It aims to establish the relationship between the morphology of the ductus venosus with the types of congenital heart disease in patients attended in maternal fetal medicine unit of clinical Colombia between January 2012 and July 2014. A cross-sectional study was performed including patients diagnosed with heart disease in 11–14 week ultrasound and then, a descriptive analysis of association between waves of ductus and type of congenital heart disease was carried out according to the school pediatric. A total of 50 patients with ultrasound and ductus venosus Doppler studies were included. A significant association between the presence of A- wave and heart related outflow tracts and right heart diseases was found (p0,01), no significant association of the S and D waves with other types of heart disease. The is a clear alteration of wave A in heart related outflow tracts and right heart diseases, allowing for more accurate diagnosis in these cases the ductus venosus Doppler as early as week 11 to 14 ultrasound. There is a need to do larger studies to demonstrate the alteration of other waves of the ductus in congenital heart disease.