This paper presents the results of research carried out by the GICO and SEPRO research groups affiliated to the Universidad Nacional de Colombia regarding the Colombian shipbuilding industry to coordinate autonomous agents in a supply chain (SC), in a decentralised environment, where buyers (shipbuilders) have a project system setting production. An exact multi-criteria linear programming model was developed for this purpose; it was aimed at reducing the deficit in meeting demand and minimizing logistical costs incurred by all SC members, considering autonomy as being inherent to them, and the need to coordinate logistical operation through knowledge of customer demand and suppliers' target planning ability. The proposed model was able to reduce total costs by 0,047%monetary units, and explicitly identify logistical costs as a chain complex.