We solve the two-particle s-wave scattering for an ultracold-atom gas confined in a quasi-one-dimensional trapping potential which is periodically modulated. The interaction between the atoms is included via Fermi's pseudopotential. For a modulated isotropic transverse harmonic confinement, the atomic center of mass and relative degrees of freedom decouple and an exact solution is possible. The modulation opens additional photon-assisted resonant scattering channels. Applying the Bethe-Peierls boundary condition, we obtain the general scattering solution of the time-dependent Floquet-Schrödinger equation which is universal at low energies. The effective one-dimensional scattering length can be controlled by the external driving.