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A Hooke׳s law-based approach to protein folding rate

Acceso Cerrado
ID Minciencias: ART-0001609559-3
Ranking: ART-ART_A1

Abstract:

Kinetics is a key aspect of the renowned protein folding problem. Here, we propose a comprehensive approach to folding kinetics where a polypeptide chain is assumed to behave as an elastic material described by the Hooke[U+05F3]s law. A novel parameter called elastic-folding constant results from our model and is suggested to distinguish between protein with two-state and multi-state folding pathways. A contact-free descriptor, named folding degree, is introduced as a suitable structural feature to study protein-folding kinetics. This approach generalizes the observed correlations between varieties of structural descriptors with the folding rate constant. Additionally several comparisons among structural classes and folding mechanisms were carried out showing the good performance of our model with proteins of different types. The present model constitutes a simple rationale for the structural and energetic factors involved in protein folding kinetics. © 2014 Elsevier Ltd.

Tópico:

Protein Structure and Dynamics

Citaciones:

Citations: 10
10

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Información de la Fuente:

SCImago Journal & Country Rank
FuenteJournal of Theoretical Biology
Cuartil año de publicaciónNo disponible
Volumen364
IssueNo disponible
Páginas407 - 417
pISSNNo disponible
ISSN0022-5193

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